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What does “Knit HTML” do in Rstudio 0.98?: Reproduce behavior of button.Neither the suggested Sys.sleep(30) nor the "Compile PDF" log are insightful (both hints point to the same thing).
#Compile pdf online how to#
How to convert R Markdown to HTML? I.e., What does “Knit HTML” do in Rstudio 0.96?: Rather superficial answer by Yihui (explains what "basically" happens) and some options how to reproduce the behavior of the RStudio button.HTML outputs are different between using knitr in Rstudio & knit2html in command line: Markdown versions.Knit2html not replicating functionality of Knit HTML button in R Studio: Caching issue.Others look like being very similar questions but turn out to be a (very) special case of it.
#Compile pdf online code#
However, they either propose only code to (more or less) reproduce the behavior of the RStudio button or they explain what "basically" happens without mentioning the possible pitfalls. There are dozens of related questions to this one. If there was a comprehensive (community wiki?) answer to this question, it could be linked in future answers that suggest using knit2pdf(). What are the (possibly unwanted) side-effects of using knit()/ knit2pdf() instead of the "Compile PDF" button in RStudio? Whenever I read/write the advice to use knit2pdf() instead of "Compile PDF", I think "correct, but the user should understand the consequences …". Some options that are usually set by RStudio may have unexpected values.The working directory might not be set as expected.Moreover, there are more subtle differences: This might be obvious and the desired behavior in cases like the second example above, but it is an unexpected consequence when knit() is used to overcome problems like in example 1 and 3. Take the fact that knit() uses objects from the global environment (whereas "Compile PDF" does not) as an example. This has implications and the problem is that not all of these implications are obvious. However, this comes at a price: There is the fundamental difference that "Compile PDF" processes the document in a separate process and environment whereas knit2pdf() and friends don't. Using knit2pdf() instead of the "Compile PDF" button usually offers a simple solution to such questions.
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